BtaALTA0022776-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105602824-105607796:+
Coord C1 exon
chr11:105602824-105602983
Coord A exon
chr11:105607628-105607709
Coord C2 exon
chr11:105607710-105607796
Length
82 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
CTCGTTCTGCGTGTCGACAGGGT
3' ss Score
7.94
Exon sequences
Seq C1 exon
GGTCCTGGGTCACTTTGAGAAGCCGCTATTCCTGGAACTTTGCAAACACATGGTCTTTGTGCAGCTTCTGGAAGGGGAGTACATCTTCCGGCCGGGGGAGCTGGACAACAGCATCTATGTGGTGCAGGACGGGCGGCTGGAGGTCCGCGTCCAGGACTCG
Seq A exon
GGTGCAGCCTCTGCCCCGCGTGACCAGTGGTGGGTGGCGGTTTGCCTGGCCCCACCATGGGTGGCTCTCCTCTGCTTCCCAG
Seq C2 exon
GCGCAGGACGGCACTGAGGTGACAGTCAAAGAGGTTCTGGCTGGAGACAGCGTCCACAGCCTCCTCAGCATTCTGGACGTCATCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(34.0=63.0)
A:
NA
C2:
PF0002724=cNMP_binding=FE(28.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGCAGCTTCTGGAAGGG
R:
CAGAATGCTGAGGAGGCTGTG
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development