BtaALTA0023608-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27477373-27477793:-
Coord C1 exon
chr23:27477626-27477793
Coord A exon
chr23:27477449-27477455
Coord C2 exon
chr23:27477373-27477448
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCATTCTTGCTCTCCTGCAGGTC
3' ss Score
12.21
Exon sequences
Seq C1 exon
GCCATTCCCATGGCCCGAGACTGGGAGCTGCTCCCCAGTGCTTCTGCCTCAGCTGAGCCACAATCCAAGAACCTGGCTTCTGGGCACTGTGGCCCCGAGACCAGCTCCTCAGGCCAGCGCTTGTACCCTGAGATCTTCTATGGCAGCCCTGGGCCTCCCAGTTCTCAG
Seq A exon
GTCTCAG
Seq C2 exon
GAGGAGCCATAGACTCTCAATTACATCCCAACAGTGGAGGCTTCCGTCCTGGGACACCCTCACTGCACTCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682-30-37,30-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTTGTACCCTGAGATCT
R:
GAAGCCTCCACTGTTGGGATG
Band lengths:
97-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development