BtaALTA0023644-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015045 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr25:2245510-2246663:-
Coord C1 exon
chr25:2246465-2246663
Coord A exon
chr25:2245768-2245793
Coord C2 exon
chr25:2245510-2245767
Length
26 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GCTCTCTCCTCCCTTGATAGCAA
3' ss Score
7.22
Exon sequences
Seq C1 exon
CAGCTCAGCCTGGTGTCCGTCTGTCCATCCCAGGGCCTTGTGGTCAACGGGTCATCCCGACACGCATAGTGGGTGGAAAGGATGCAACAATCGGACACTGGCCGTGGCAGGGCAGCCTGCGTCTGTGGGGCTACCACTTCTGCGGAGCGAGCCTGCTCAACCGCCGCTGGGCGCTCTCGGCCGCGCACTGCTTTGAAAA
Seq A exon
CAACCGAAATCCCTTTCACTGGTCAG
Seq C2 exon
TCCAGTTTGGGGAGCTGTCTGCCGCACCATCCATTTGGAACTTGCAAGCCTACTACAACCGTTACAATGTGGACCAGATTTTCCTGAGCCCCCACTATCTGGGCGCTCCGGTGTATGACATCGCCCTGTTGAAGCTGTCCTCCTCAGTCACCTATACTAAGTACATCCAGCCCATCTGCGTCATGGCCTCCATCTCTGAGTTTGAGAACAGGAGTGACTGCTGGGTGACCGGCTGGGGAGACATTGAAGAGGAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015045-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGCACTGCTTTGAAAA
R:
CAGATAGTGGGGGCTCAGGAA
Band lengths:
120-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development