BtaALTA0024322-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012784 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr5:30042571-30046623:+
Coord C1 exon
chr5:30042571-30042655
Coord A exon
chr5:30046421-30046431
Coord C2 exon
chr5:30046432-30046623
Length
11 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
AAGTTTCCCCCTTTTCTTAGAAT
3' ss Score
7.06
Exon sequences
Seq C1 exon
ATGGATACTACGATGCTGAATATGCGGAATCTGTTTGAGCAGCTTGTACGCCGGGTGGAGATTCTCAGTGAAGGAAATGAACTCC
Seq A exon
AATTTATCCAG
Seq C2 exon
TTGGCAAAGGACTTTGAAGATTTTCGTAAAAAGTGGCAGAGAACAGACCACGAGTTGGGCAAATACAAGGATCTTTTGATGAAAGCAGAGACTGAGCGTAGTGCTCTGGATGTTAAACTGAAACATGCACGCAATCAGGTGGATGTAGAGATCAAACGGAGACAGCGAGCTGAGGCTGACTGTGAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012784-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF078886=CALCOCO1=PU(10.1=58.6),PF140731=Cep57_CLD=PU(1.6=6.9)
A:
NA
C2:
PF078886=CALCOCO1=FE(39.9=100),PF140731=Cep57_CLD=FE(52.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTGGAGATTCTCAGTGA
R:
CCAACTCGTGGTCTGTTCTCTG
Band lengths:
93-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development