BtaALTA0024410-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103130251-103130813:-
Coord C1 exon
chr11:103130718-103130813
Coord A exon
chr11:103130363-103130452
Coord C2 exon
chr11:103130251-103130362
Length
90 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
AAGCTAGCTGTTCTGTGCAGCCG
3' ss Score
1.49
Exon sequences
Seq C1 exon
CTACACATTGTCATGCGAGCTGGAGCCCCCCTCCGAGTCGGCCAGCAACACCCTCAAGGTGAAGAAGAACACGGCCATCGTCAAGCGCTGGAGCGA
Seq A exon
CCGCCAGGCCCCCAGCACAGAGCTCAGTACCAGCGGCAGCTGCCACTCCAAGTCCTGTGACCAACTCAGGTACGGCCCCTACCTCAGCAG
Seq C2 exon
CGGAGACATTGCTGACGCACTCAGCGTCCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCCCCCGACGGCCAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-13-23,13-22,13-21,13-20-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTCATGCGAGCTGGAG
R:
ACTCTGGGACGAAGCTCATGT
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development