BtaALTA0024418-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97706783-97710666:+
Coord C1 exon
chr11:97706783-97706904
Coord A exon
chr11:97710559-97710566
Coord C2 exon
chr11:97710567-97710666
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TCTCTCCCTGTCCTCCGCAGGGC
3' ss Score
12.86
Exon sequences
Seq C1 exon
GACTTCTCCAGACAGGTTATGTCACCGACAGAGGCTGCCCTGAAGCTCTCTGTGGCCTGGAGACTATGTACAAGAGGAATGGTCTGATGGCTAGCGTGTTGGTCACCTCCGCCACTCCACAG
Seq A exon
GGCAGCAG
Seq C2 exon
CAGCTCAGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTACGACGCCGTTGTCTTCGATGTCCTGAAAGTGACTCCCGAGGAGTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-9-7,9-6,9-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGTCTGATGGCTAGCG
R:
CTCTTGCTGGCATAGTCGCAG
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development