BtaALTA0024935-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013645 | RFFL
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:24821]
Coordinates
chr19:15378376-15388235:+
Coord C1 exon
chr19:15378376-15378570
Coord A exon
chr19:15387846-15387848
Coord C2 exon
chr19:15387849-15388235
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCCTCTCGCTCTTAAGCAGCAG
3' ss Score
3.07
Exon sequences
Seq C1 exon
GCATCAGATCTTATCATGTGGGCAACCTGCTGCAACTGGTTCTGCCTGGATGGACAGCCTGAGGAGGCCTCACCGCCCCAGGGAGCCAGGACACAGGCCTATTCCAACCCTGGGTACAGCTCCTTCCCTTCTCCCACGGGCTCAGAACCAAGCTGCAAGGCGTGTGGGACTCACTTCGCAAGCATGGCCAGGAAG
Seq A exon
CAG
Seq C2 exon
ACCTGCTTGGACTGTAAGAAGAACTTCTGTACCAGCTGTTCCAGCCAAGTGGGGGCCGGGCCCCGCCTCTGCCTTCTCTGCCAGCGCTTCCGTGCCACGGACTTCCGGCGGGAGGAGCTCATGAAGATGAAGGTGAAGGACCTGAGGGACTATCTCAGCCTCCACGACATCTCTACCGACATGTGCCGGGAGAAGGAGGAGCTGGTGTCCCTGGTGCTCGGCCAGCAGCCCGTCATCTCCCAGGAGGGCAGGACTCAGGCGCCCCACTTGGGCCCCGACTTCCCGGAGCAGCAGGCCTTCCTCGCCCGGCCCCACACCAGCACCGTGCCGCCTACCTCACCCGGCCTCCAGTCTGCACCCCCCGGCCAGGCGCAGGGCCGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013645-3-5,3-4,3-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.431
Domain overlap (PFAM):
C1:
PF0231811=FYVE_2=PU(31.3=32.3)
A:
NA
C2:
PF0231811=FYVE_2=PD(65.7=33.8),PF102084=Armet=WD(100=50.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGCTCCTTCCCTTCT
R:
TCTTCTTACAGTCCAAGCAGGT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development