BtaALTA0025230-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000540 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr19:34670331-34671026:-
Coord C1 exon
chr19:34670738-34671026
Coord A exon
NA
Coord C2 exon
chr19:34670331-34670534
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
CTCGTCTCTGGGCCCAGGAGACC
3' ss Score
-13.6
Exon sequences
Seq C1 exon
GTCCCATACGCCGTTCCCCAAGCTGGAGCTGGGGCTGGGGTCCCGGCCCACGGCGCCCCGCGAGCCGCCCGCCTGCTCCATCTGCCTGGAGAGGCCGCGTGAGCCCATCTCGCTGGACTGTGGCCACGACTTCTGCCCGCGGTGCTTCAGCACCCACCGCGTGCCTGGCTGCGGGCCGCCCTGCTGCCCCGAGTGCCGCAAGACCTGCAAGCGGAGGAAGGGCCTGCGGGGCCTGGGGGAGAGGATGAGGCTCCTGCCGCAGAGGCCGCTGCCCGCCGCCGCGCTGCAG
Seq A exon
NA
Seq C2 exon
ACCTGCGCTGTGCGGGCTGAGCCGCTGCTGCTGGTGCGGATCAACGCCTCGGGGGGCCTCATCCTGCGAATGGGCGCCATCAACCGCTGCCTGAAGCACCCGCTGGCCAGGGACACCCCGGTCTGCCTCCTCGCCGTCCTGGGGGGGCCACACTCAGGGAAGACCTTCCTCCTCAACCACCTGCTCCAGGGCCTGCCCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000540-5-3,5-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009720=zf-C3HC4=WD(100=42.3)
A:
NA
C2:
PF0226314=GBP=PU(25.8=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGGATGAGGCTCCTG
R:
CGTTGATCCGCACCAGCAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development