BtaALTA0026365-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60757330-60758983:-
Coord C1 exon
chr16:60758911-60758983
Coord A exon
chr16:60757477-60757614
Coord C2 exon
chr16:60757330-60757476
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TCTTTGTCTTGTGTCCTTAGAAA
3' ss Score
10.48
Exon sequences
Seq C1 exon
CAAAAGGAAGCAGGAGACATTGGCCGTCCTCAGTCTGCTCAAGTGGTTATTTCGGAAGCCAGAAAAACTCCAG
Seq A exon
AAAACACTTTCTATCAAGATCTTTCTGGACCTCAAGGCAACTCAGAAGCCTATGGTGACCGCTCTGCTCTGTGGCCAACTCTGGAGCAGTCGGGCCCAGCCCAGCTCAGCCCACAGCAGCCCCGCTCCTACCCAACAG
Seq C2 exon
GTGGCGGTTCTGGGCAGATGGGGGTCCCAGTGCCTCTCTACTCGGTTCCTGAGACCCATCTTCTGGGGACCAGTGGCAGCATGGCAGTGACAGGGGCTCCCGGAGGAACAGCCTGGGAGGAAGCCCAGCAGATCCACCTGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-33-29,33-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAAGCAGGAGACATTGGC
R:
CAGGGGGCAGGTGGATCTG
Band lengths:
218-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development