BtaALTA0027475-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104421198-104422130:-
Coord C1 exon
chr11:104422031-104422130
Coord A exon
chr11:104421300-104421409
Coord C2 exon
chr11:104421198-104421299
Length
110 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
CTCACAGCTCCTGTCCGCAGGCC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCCCCGCCCAGCGTTCGCGGGGCCCTGGGTGCCACACCCCAGCTCATGGCGGTGTTCGGGTCACTATCCCTCTATGCCCTTG
Seq A exon
GCCTGCTGCTGCCCTGGCGCTGGCTGGCCGTGGCCGGGGAGGGGCCGGTGCTCGTCATGGTCCTGCTGCTCAGCTGCATGCCCAACTCCCCTCGCTTCCTGCTCTCCAAG
Seq C2 exon
GGCAGGGACGCGGAGGCGCTGCAGGCACTGGCCTGGCTGCGAGGGCCCGATGCCGACACCCGCTGGGAGTTCGAGCAGATCCAGGACACCGTCCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.2=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACGTGTCTGAGATTGCCC
R:
CTGTCTCCGGACGGTGTC
Band lengths:
202-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development