BtaALTA0027476-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001824 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr11:104420643-104421409:-
Coord C1 exon
chr11:104421198-104421409
Coord A exon
chr11:104420791-104420795
Coord C2 exon
chr11:104420643-104420790
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CGGCAGCCTCGTGTCTCCAGAGC
3' ss Score
5.22
Exon sequences
Seq C1 exon
GCCTGCTGCTGCCCTGGCGCTGGCTGGCCGTGGCCGGGGAGGGGCCGGTGCTCGTCATGGTCCTGCTGCTCAGCTGCATGCCCAACTCCCCTCGCTTCCTGCTCTCCAAGGGCAGGGACGCGGAGGCGCTGCAGGCACTGGCCTGGCTGCGAGGGCCCGATGCCGACACCCGCTGGGAGTTCGAGCAGATCCAGGACACCGTCCGGAGACAG
Seq A exon
AGCAG
Seq C2 exon
CCACCTGTCGTGGGCCGAGGCCCGGGACCCGCACATGTACCGCCCGATTGTCATCGCCCTGCTGATGCGCTTCCTGCAGCAGCTGACAGGCATCACGCCCATCCTCGTGTACCTGCAGTCCATCTTTGACAGCACCGCGGTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001824-4-7,4-6,4-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGAGCAGATCCAGGACA
R:
CATCAGCAGGGCGATGACAAT
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development