BtaALTA0027665-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34706469-34715996:-
Coord C1 exon
chr2:34715808-34715996
Coord A exon
NA
Coord C2 exon
chr2:34706469-34706557
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AATAACAATCTCTTTAGCAGGCC
3' ss Score
4.55
Exon sequences
Seq C1 exon
ATATGGTCCTTGACCAACAAGTGAGCTCAGGTCAGCTCAATGAGGATGTACGCCACAGGGTCCACGAGGCTCTGATGAAACAGCATCACCACCAGAATCAGAAGAAGCTCACCAATAGGATTCCCATTGTTCGTTCCTTTGCTGATATTGGCAAGAAACAATCAGAACCAAATTCCATGGATAAAAATG
Seq A exon
NA
Seq C2 exon
GCCAGGTTGTTTCTCCTCAGTCTGCACCAGCCTGTGTTGAAAATAAAAATGATGTGAGCAGGGAAAACAGCACAGTTGATTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-6-8,6-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(21.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATTGTTCGTTCCTTTGCT
R:
GCTGGTGCAGACTGAGGAGAA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development