BtaALTA0028782-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44454403-44454887:+
Coord C1 exon
chr15:44454403-44454580
Coord A exon
NA
Coord C2 exon
chr15:44454846-44454887
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TTCATGACTCTTTTTCCCAGGCA
3' ss Score
7.36
Exon sequences
Seq C1 exon
TACCCTGTCCAGCTGCTCCCATGCGGTGGTGGCTTTGCTCTACCCCTTCTCCTGGCAGCACACCTTCATTCCTGTCCTCCCGGCCTCCATGATCGACATCGTCTGCTGTCCCACCCCTTTCCTGGTTGGCCTGCTCTCCAGCTCCCTCCCCAAACTGAAGGAGCTGCCTGTGGAAGAG
Seq A exon
NA
Seq C2 exon
GCACTGATGGTGAATCTGGGGTCTGACCGATTCATCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356-41-31,41-30-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(31.9=100)
A:
NA
C2:
PF0214116=DENN=PD(4.3=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTGTCCAGCTGCTCC
R:
GTCGGATGAATCGGTCAGACC
Band lengths:
218-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development