BtaALTA0028854-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001887 | STAM2
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (STAM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076106]
Coordinates
chr2:44153333-44155731:+
Coord C1 exon
chr2:44153333-44153427
Coord A exon
NA
Coord C2 exon
chr2:44155652-44155731
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTACTTTGTTTCCATAGCAGCTG
3' ss Score
5.84
Exon sequences
Seq C1 exon
TGATGCTAATTGGTGGAAAGGAGAAAATCACAGAGGAATTGGACTCTTCCCATCTAATTTTGTAACATGTAATTTAAACATAGAATCAGAGGCAG
Seq A exon
NA
Seq C2 exon
CTGTGGACAAATTGAATATAATTGATGATGAGGAGGAGGAAATTAAGAAATCAGAGCCTGAGCCTGTTTATATAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001887-2-4,2-3,2-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGGAATTGGACTCTTCCCA
R:
TTTCCTCCTCCTCATCATCAATT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development