BtaALTA0028988-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104351500-104352275:+
Coord C1 exon
chr11:104351500-104351660
Coord A exon
NA
Coord C2 exon
chr11:104352218-104352275
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTGGTTCTGCGCCGGCAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
ACGCTGGAAGCCATGCACCTGCGCAAGTCCATTCGGAGCTCCCCCGCCAGCCTGAGCGGCGTCCTGCGGACCATGGAGGAGAAGGTCCCCGACGCGAAAACCTTCCAGGCCCTCTTGCCTCTGATGCTCCAGGCCGACCCCGCGGAGCGAGTCACCGTCAG
Seq A exon
NA
Seq C2 exon
GTGGTGCCCGAGTTCATCATTGACATGCTGCTCGAGAGCAACGTGGCCAGCATCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-10-10,10-9,10-8-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.7=100)
A:
NA
C2:
PF0006920=Pkinase=PD(3.0=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACCATGGAGGAGAAGGTC
R:
TCTCGAGCAGCATGTCAATGA
Band lengths:
132-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development