BtaALTA0029148-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002137 | SUGT1
Description
Bos taurus SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (SUGT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046203]
Coordinates
chr12:11171835-11172149:-
Coord C1 exon
chr12:11171987-11172149
Coord A exon
chr12:11171893-11171895
Coord C2 exon
chr12:11171835-11171892
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TGAAATCTTTCTTTTCCTAGCAG
3' ss Score
6.1
Exon sequences
Seq C1 exon
TTGGCTACTTAGGACGGAAGCTCGGTGGGTGATTCTCCAGAAGTTTCCCCCTTGGGCGGCGGCGGCGGCGGCGCTGGTAACCCCGGGAAGAGCAGCTCCGGCAGCGGGAACCGTGACGATTAGAGATGGCGGCGGCGGCGGCGGGCCCTGTGGCGGCCGCGAG
Seq A exon
CAG
Seq C2 exon
GTTGTTCCGGAGCTTCTCAGATGCCCTCATCGAGCAGGACCCCCAAGCGGCGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002137-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(28.6=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACGATTAGAGATGGCGG
R:
CTTGGGGGTCCTGCTCGAT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development