BtaALTA0029998-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006222 | TFDP2
Description
Bos taurus transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075241]
Coordinates
chr1:128002086-128009688:+
Coord C1 exon
chr1:128002086-128002248
Coord A exon
chr1:128009602-128009604
Coord C2 exon
chr1:128009605-128009688
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
AATAAACATATTTCTTTTAGCAG
3' ss Score
4.26
Exon sequences
Seq C1 exon
CAAACGAAGCAAAAAAGGAGATAAAAATGGAAAAGGCTTGAGACATTTTTCAATGAAAGTGTGTGAGAAAGTTCAGCGGAAAGGCACAACGTCATATAATGAAGTAGCTGATGAGCTGGTGTCCGAGTTCACCAATTCAAACAACCACTTGGCAGCTGATTCG
Seq A exon
CAG
Seq C2 exon
GCTTATGATCAGAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGCTGATGGCAATGAACATAATTTCAAAGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006222-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0231915=E2F_TDP=PU(56.1=83.6)
A:
NA
C2:
PF0231915=E2F_TDP=PD(41.5=70.8),PF087815=DP=PU(18.2=12.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTGGTGTCCGAGTTC
R:
AGCATCATAAACTCTTCGCCT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development