BtaALTA0030040-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000024269 | TGFBR3
Description
transforming growth factor, beta receptor III [Source:HGNC Symbol;Acc:HGNC:11774]
Coordinates
chr3:51845181-51854173:+
Coord C1 exon
chr3:51845181-51845301
Coord A exon
chr3:51854132-51854137
Coord C2 exon
chr3:51854138-51854173
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GATTTATGTTTTTGTTTCAGAAA
3' ss Score
9.88
Exon sequences
Seq C1 exon
TGTGTGCTTCCTGATGAAGCCTGCACCTCGCTGGATGCCTCAATGATCTGGGCCATGATGCAGAATAAGAAGACGTTCACCAGGCCCCTCGCTGTTATCCACCACGAAGTACCATTTAAAG
Seq A exon
AAACAG
Seq C2 exon
GTCCAAGTATTAAGGAACCGATTCCAATTACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024269-37-24,37-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(1.1=7.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGAAGACGTTCACCAGGCC
R:
GTGGAGTAATTGGAATCGGTTC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development