BtaALTA0030724-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22484583-22488765:-
Coord C1 exon
chr7:22488624-22488765
Coord A exon
NA
Coord C2 exon
chr7:22484583-22484693
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAGCCTCCCTCTCTACACAGGGC
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGGAGCCCACTGCCAGTGACTTACAGCTGGTGCCTGGAGCCACCAAGGACGTCCTGGCTGCAGATGCCATGTGCTGCCGGGCGGCCCTGTCCACTGTTGTGGCCACCAGCATCGTCCTCGTCATCCTGGGAGTCCTTGTGG
Seq A exon
NA
Seq C2 exon
GGCGTCGACGTAGAGCACATGGCTGAGCTGCGTGGGATCCGGTTTGCCCCCAGCTTGCAGCAGGAGACCTCAGAGTACTACCGCACGCTGACGCCCGCTCTGGAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139015=SEA=PU(48.7=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCATCCTGGGAGTCCTT
R:
TACTCTGAGGTCTCCTGCTGC
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development