BtaALTA0031573-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98410766-98411153:+
Coord C1 exon
chr11:98410766-98410856
Coord A exon
chr11:98411010-98411013
Coord C2 exon
chr11:98411014-98411153
Length
4 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTGGGTCCCCTCTCCCTCAGGTA
3' ss Score
10.2
Exon sequences
Seq C1 exon
CTACCATCGAGCTCATCAGTGCTTGGAGCAAGAGGACTGGGAGATGGCCGTGCTCTTCTTCTCCCGCGCCCTCCACCTGGACCCCCAGCTG
Seq A exon
GTAG
Seq C2 exon
AATTCTATGCCTTAAGAGCCGAGGCTTATATCCAGCTCTGCGACTTCTCCTCGGCCGCCCAGAACCTTCGGAAGGCCTACCACTCCCAGCCAGAGAACAGCAACTACCTGGAGCGGCTCGCCCTGGTGCTTTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.8=100)
A:
NA
C2:
PF134141=TPR_11=PD(46.3=64.6),PF134141=TPR_11=PU(12.9=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAAGAGGACTGGGAGAT
R:
GAGCTGGATATAAGCCTCGGC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development