BtaALTA0031574-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98416188-98420051:+
Coord C1 exon
chr11:98416188-98416329
Coord A exon
NA
Coord C2 exon
chr11:98419886-98420051
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGCCCACTGTGTCCTGCAGGCA
3' ss Score
7.65
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGACCTTTGCTGAGGCGGACTACCAGCAGGCGCTGGCACTGAGTCCGAAGGACGAGGGCGCCCACCTGCGCATGGGCCTGTTGCAGGAGAAGTTGGGCTTCTGCGAGCACCGGAGCAG
Seq A exon
NA
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCAATGGCCATCCAGCACAATCCCCAGAAGCCCCAGTACTACCTGTACCGTGCCCGGAGCCGGCAGCTCATGCAGAACATTTTTGGGGCCCGCCAGGATGTTGCCACTGTCCTGCTCCTTGACCCCAAGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509-8-11,8-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(22.4=31.2)
A:
NA
C2:
PF134141=TPR_11=PD(76.1=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTGCTGAGGCGGACTA
R:
AGTGGTTCTCTGCCTTCTGGA
Band lengths:
143-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development