BtaALTA0032001-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31671272-31674756:+
Coord C1 exon
chr21:31671272-31671328
Coord A exon
chr21:31674616-31674622
Coord C2 exon
chr21:31674623-31674756
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
AATTTTTAATTTTTTTGTAGGAT
3' ss Score
8.36
Exon sequences
Seq C1 exon
AATGGGACAACAGAAGAGGTGACTTCAGAAGAGGAGGAAGAGGAAGAGATGGCTGAA
Seq A exon
GATATAG
Seq C2 exon
AAGACTTGGATCATTATGAGATGAAGGAAGAAGAGCCCATTAGTGGGAAAAAGTCAGAGGATGAAGGAATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATTAGGAAGACTCAAAGGCAAGACCATCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024-14-12,14-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.660
Domain overlap (PFAM):
C1:
PF0577317=RWD=FE(13.8=100)
A:
NA
C2:
PF0577317=RWD=PD(10.0=27.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAACAGAAGAGGTGACT
R:
TGGGCTCTTCTTCCTTCATCTCA
Band lengths:
94-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development