BtaALTA0032898-1/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35045930-35047805:+
Coord C1 exon
chr26:35045930-35046055
Coord A exon
NA
Coord C2 exon
chr26:35047599-35047805
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGCCCACTGTCCTGCCCCAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
AAGCCAAGCGGCCAGTTAACCTCTGCAAACCCAGCCCATGCATGAACGAGGGCATCTGTGTCCTGCGCAACGGGAGCTACCGCTGCGAGTGCCAGGGTGGCTGGGAGGGCCCCCACTGCGAGAACC
Seq A exon
NA
Seq C2 exon
GGAGAAGAGAGGGCTCAGCTGCCAACAGAGCTGCCCAGGGACATGGTAGCAGCTGGTTGCCCCCCTCACAACCACACTGAGAACTCATCACATGTTTGCTGACCTAATTGTGCACTGTGGAGCTGGTGCCGTCTGCCGCGTGTCCCCCGAGGAGCAGCAGAGGAACCTGGAGACTTCTGATGGCCTGTTTGAAGCTCACGTTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860-15-22,15-21,15-20,15-19-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATGAACGAGGGCATCTG
R:
CAGCTCTGTTGGCAGCTGAG
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development