BtaALTA0033546-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56695813-56697496:+
Coord C1 exon
chr16:56695813-56695913
Coord A exon
NA
Coord C2 exon
chr16:56696932-56697496
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TCGGTTGTCTCTCGCAGCAGGGT
3' ss Score
5.44
Exon sequences
Seq C1 exon
TGGTGTAGGCTCCAAAATAAACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAAAAACGCTTTGGAAAAAG
Seq A exon
NA
Seq C2 exon
GGTTGAATGCCTGCCTACACCCTCAGGCACGACCATGGAGAAAAGTGGGAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTCCTGAGCCATCTGAACCAGCTGCGCATGCAGGGCCGTCTCTGTGACATCGTGGTCAACGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTCCTGGCTGCCAGCTCCCCCTACTTCCGGGATCATATGTCCTTGAATGAGATGAGTACTGTCTCCATATCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACGGGGCGGATCTGCCTGCAACTGGCGGATATCATCAGCTACCTGACCGCTGCCAGTTTTCTGCAGATGCAGCACATTATAGACAAATGTACCCAGATCCTGGAGGGCATTCATTTCAAAATTAACGTGGCTGAGGTTGAAGCCGAATTAAGTCAAACGAGGACCAAGCATGCAGAGGGACCTCCGGAGTCTCACAGAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGATGGCATCGACAGAGG
R:
GGTGTAGGCAGGCATTCAACC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development