BtaALTA0033559-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47661799-47662172:-
Coord C1 exon
chr16:47662036-47662172
Coord A exon
chr16:47661960-47661963
Coord C2 exon
chr16:47661799-47661959
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCCCTCCTTGTCCCCACAGCCA
3' ss Score
12.35
Exon sequences
Seq C1 exon
GAACGAGCGGCCATACGTCTGTGAGTTCTGCAGCCACGCCTTCACCCAGAAGGCCAATCTCAACATGCACCTGCGCACGCACACGGGCGAGAAGCCCTTCCAGTGCCACCTTTGTGGCAAGACCTTCCGCACCCAAG
Seq A exon
CCAG
Seq C2 exon
CCTGGACAAGCACAACCGCACCCACACCGGCGAGAGGCCCTTCAGCTGTGAGTTCTGTGAGCAGCGCTTCACAGAGAAGGGGCCCCTGCTCAGGCATGTGGCCAGCCGCCACCAGGAGGGCCGGCCCCACTTCTGCCAGATCTGCGGGAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735-12-13,12-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.2=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGTGGCAAGACCTTCC
R:
TGCTCACAGAACTCACAGCTG
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development