BtaALTA0033671-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004974 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr1:59064067-59064980:+
Coord C1 exon
chr1:59064067-59064201
Coord A exon
chr1:59064805-59064810
Coord C2 exon
chr1:59064811-59064980
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GGGCTTCGTGTGCCTCGTAGTGA
3' ss Score
4.6
Exon sequences
Seq C1 exon
AGACTCCAGTCATCGCGCCCGTAACCCAGCGGAGCAGAGATCCCGGAGCCGCGTCCGCGCCCCGGGAGAAGCCAACCCTGCTCTTCTCCGCCTCGGCCTCTTTGGCTGTGGCCGCACCTCGGCTCCGGAGCGCAG
Seq A exon
TGACAG
Seq C2 exon
GTGGAAATCACGACCCAGAAGGGCACTATGAAGCCAGTGAAGAAAACCAAAGCGGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCTTGTTTGTGTGATTGCCAAGATCTGGACGAAGGGTGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004974-1-3,1-2,1-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAACCCTGCTCTTCTC
R:
TCACTGGCTTCATAGTGCCCT
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development