BtaALTA0033727-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000868 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr18:2532232-2535044:+
Coord C1 exon
chr18:2532232-2532403
Coord A exon
chr18:2534942-2534943
Coord C2 exon
chr18:2534944-2535044
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCATGTGCTCTTTCCTAGAGG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CCAAATGCTAATCATATCAGAATAAATAGCAATATGCCATTTCAGGGATCAGTTTCATTCACCGATGTGACTGTGGACTTCACCCAGGAGGAATGGGAGCAACTGGACCCCTCTCAGAGGATCCTCTACATGGACGTGATGCTGGAGAATTACAGCAACTTACTGTCAGTGG
Seq A exon
AG
Seq C2 exon
GTATGGAAGGCCGATGACCAGATGGAGACAGACCCCAGAAACCCAGATGAGCAGGCGAGGCCGTTTGTGATCTTTAAGGACCAGACACCAACCGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000868-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=70.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAATGGGAGCAACTGGAC
R:
TCTGGTCATCGGCCTTCCATA
Band lengths:
107-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development