BtaALTA0033728-1/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2375036-2384528:-
Coord C1 exon
chr7:2384432-2384528
Coord A exon
NA
Coord C2 exon
chr7:2375036-2375152
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCAGGAATTTATAGTTTCAGGAT
3' ss Score
-2.04
Exon sequences
Seq C1 exon
CTCCATATTCTCTGGATCCTGCCAATCCCCTGGGAAGGACACCACAGGAAGGAAGGAGAAGGCAATGGCTGCTGGGCCTCTACTTTGGGGAGTTCAG
Seq A exon
NA
Seq C2 exon
GATTCAAGGATGTGTCTGCGGACTTCACCTGGGAGGAGCAGATCCATCTAGATTCTCCTCAGAGGAACCTGTATGGGGAAGTGATGCTGAGAAACTATAGGAACCTGGTTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122-4-7,4-6,4-5,4-4-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGGAAGGAGAAGGCA
R:
AGATGGATCTGCTCCTCCCAG
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development