BtaALTA0033738-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36023195-36023745:+
Coord C1 exon
chr18:36023195-36023321
Coord A exon
NA
Coord C2 exon
chr18:36023650-36023745
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATGTGTTTACCTGTGAGCAGGAT
3' ss Score
5.29
Exon sequences
Seq C1 exon
GAATCACTGACATTTAAGGATGTAGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGATGCTGCTCAGAGGCGCTTGTACAGGGATGTGATGTTGGAGAACTATAGCCACTTGGTTTCTCTTG
Seq A exon
NA
Seq C2 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488-5-4,5-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGAGGCGCTTGTACAG
R:
TGAAGATCACCTCTGGCTTGGA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development