BtaALTA0033752-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21402976-21403922:+
Coord C1 exon
chr7:21402976-21403087
Coord A exon
NA
Coord C2 exon
chr7:21403825-21403922
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACCGACCCCGCCTCATTCAGATG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GCCATGGAGCTGCTGGTGGAGAAGGCCCTGAGCAGCACCAAGGGGCCCCTGAGCCCCGGGGATGCTGTGCGCCGAGTCTTGGAGTGCGTGGCCTCGGGGACACTCCTCACAG
Seq A exon
NA
Seq C2 exon
ATGGGCCCGGGCTCCAGGATCCCTGTGAGAGAGACCAGATGGATGCCCTCGGCTCCATGACCCTCCAAGAACGAGAAGACATCACGGCCAGCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-25-26,25-25,25-24-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.697
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(15.0=100)
A:
NA
C2:
PF075289=DZF=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCTGCTGGTGGAGAAG
R:
TCGTTCTTGGAGGGTCATGGA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development