BtaALTA0033787-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013198 | ZGRF1
Description
zinc finger, GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr6:14210935-14213665:+
Coord C1 exon
chr6:14210935-14211078
Coord A exon
chr6:14213551-14213553
Coord C2 exon
chr6:14213554-14213665
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTTGTATTCTGTCTACAGCAG
3' ss Score
8.15
Exon sequences
Seq C1 exon
ATGATCTTTGGGTGGTTTCGAAAACCCTAGACTTTGAATTGGATACTTTTATTGCATGCAGTACTTTCTTTGGACCATCATCTATCAATGAGGTAGAGCTTCTACCTTTGAAAGGTTATTTCCCTTCGAACTGGCCCACTAACA
Seq A exon
CAG
Seq C2 exon
TGGTCCACGCCTTATTGGTTTGTAATGCCAGCACAGAGCTGACCACTTTAAAAAATATTCGGGACTGCTTTAATCCAGCTACTCTACCTCTAACACAGTACCTCTTAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013198-7-9,7-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGAACTGGCCCACTAAC
R:
AGCTGGATTAAAGCAGTCCCG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development