BtaALTA0033822-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008492 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:84692145-84692575:+
Coord C1 exon
chrX:84692145-84692188
Coord A exon
NA
Coord C2 exon
chrX:84692509-84692575
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CCCATGTTTCCAAGGTGCAGAAG
3' ss Score
-1.78
Exon sequences
Seq C1 exon
GAGATGGCCTGACTGGGAAGGCGAGTGAGAAGCCGCCTGAGAGG
Seq A exon
NA
Seq C2 exon
AAGAGAAGCGAGCGCGTTAGAAGAGTAGAGCCTCCAAAACCTGAGGTTGTGGATTCCACTGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008492-10-4,10-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCCTGACTGGGAAGG
R:
ACAACCTCAGGTTTTGGAGGC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development