BtaALTA0033855-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040072 | ZNF140
Description
zinc finger protein 140 [Source:HGNC Symbol;Acc:HGNC:12925]
Coordinates
chr17:45107093-45107581:+
Coord C1 exon
chr17:45107093-45107231
Coord A exon
NA
Coord C2 exon
chr17:45107486-45107581
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
ATTTCATTTTCCACAAGCAGGTC
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATGTCATTTCAGGAGTCAGTGACATTCAGAGATGTGTCCATAGACTTCTCCCGGGAGGAGTGGGAATGGCTCCAGCCTGCTCAGAGAGATTTGTACAGACATGTAATGTTGGAGAACTATGGCCACCTGGTGTCACTGG
Seq A exon
NA
Seq C2 exon
GTCTTAACATGTCTAAGCCAGATGTGGTTTCCTTATTGGAACAAGGGAAAGAGCCCTGGCTGGGGAATGGAGATGTAAGCAGAGAGCTGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040072-1-4,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=87.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTATGGCCACCTGGTGT
R:
TACATCTCCATTCCCCAGCCA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development