BtaALTA0033863-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009889 | ZNF181
Description
Bos taurus zinc finger protein 181 (ZNF181), mRNA. [Source:RefSeq mRNA;Acc:NM_001076549]
Coordinates
chr18:45712288-45712765:+
Coord C1 exon
chr18:45712288-45712408
Coord A exon
NA
Coord C2 exon
chr18:45712670-45712765
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
AATATTTTTCCTGCAAGCAGGTC
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTGACATTTAGTGATGTGGCCATAGACTTCTCACATGAAGAGTGGAGATGGCTCAATTCTACTCAGAGGAATTTATACAAGGATGTGATGGTCCAGAATTATGAGAACCTGGTATCCCTAG
Seq A exon
NA
Seq C2 exon
GTCTTTCCATACCTAAGCCATATGTGATTGCTTTATTGGAGGATGGCAAAGAACCTTGTATGGTGGAGGAAAAGCTGTCAAAAGATACATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009889-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGATGTGATGGTCCAGA
R:
ACAAGGTTCTTTGCCATCCTCC
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development