BtaALTA0033864-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009889 | ZNF181
Description
Bos taurus zinc finger protein 181 (ZNF181), mRNA. [Source:RefSeq mRNA;Acc:NM_001076549]
Coordinates
chr18:45712667-45715156:+
Coord C1 exon
chr18:45712667-45712765
Coord A exon
chr18:45713752-45714044
Coord C2 exon
chr18:45714045-45715156
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTCTTTTGATATATTACAGATT
3' ss Score
7.98
Exon sequences
Seq C1 exon
CAGGTCTTTCCATACCTAAGCCATATGTGATTGCTTTATTGGAGGATGGCAAAGAACCTTGTATGGTGGAGGAAAAGCTGTCAAAAGATACATTTCCAG
Seq A exon
ATTGTAAAACAAGATGGGAAAACAAAGAATTATCAATGAAGGAGGATATTTATGATGAAGATTTACCCCAAATGGTATTAAAGGAAAAAACTATACAACAAAATCATGAATTTTCAAATTTTAACAAGGACTTGTATTATATCAAAAAGTTCAAGGGGAAGTATGAAAATCAAGTAGAGCATTTCAGACCAGTGACCCTCACCTTTAGAGAAAGTCCCATTGGGGAAAGTGTTTACAAATGTAATGCATTTAAAAGCATTTTCCATTTAAAGTCTGTTTTTTCTGAACCACAG
Seq C2 exon
AGAATTTCTGCTGAAGGGAAGTCACATAAATGTGATATACTTAAGAAGAGTTTACCAACAAATTCAGTTATAAAAAATGAGAATATCAATGATGGAAAGAAACTTCTGAATTCTAATGAAAGTGTAGCAGCCTTCAGCCAAAGCAAATCTCTTACCCTTCACCAGACTTTGAATAAAGAGAAAATCTATACATGCAATGAATGTGGGAAAGCCTTTGGCAAACAATCAATCCTTAATCGGCACTGGAGAATTCATACAGGAGAGAAACCCTATGAATGTCATGAATGTGGGAAGACTTTTAGCCATGGCTCATCCCTTACTCGACATCAAATAAGTCACAGTGGAGAGAAACCTTACAAATGTATTGAATGTGGAAAAGCCTTTAGCCATGTCTCATCACTTACTAATCATCAAAGCACTCACACTGGAGAGAAACCATATGAATGTATGAACTGTGGAAAGGCGTTTAGTCGCGTTTCACATCTCATTGAACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009889-5-7,5-6,5-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=PU(53.8=3.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAGGAAAAGCTGTCAA
R:
CCTGTATGAATTCTCCAGTGCCG
Band lengths:
296-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development