BtaALTA0033911-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000039523 | ZNF266
Description
Bos taurus zinc finger protein 266 (ZNF266), mRNA. [Source:RefSeq mRNA;Acc:NM_001104968]
Coordinates
chr7:15437847-15438563:+
Coord C1 exon
chr7:15437847-15437935
Coord A exon
chr7:15438437-15438482
Coord C2 exon
chr7:15438483-15438563
Length
46 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTATATGTATGATGGTTCAGGAC
3' ss Score
5.07
Exon sequences
Seq C1 exon
GTGTTCTTATTAAGGACTCTTTCTGCCTTCCTGAGGAAAAGATAGAAGCAAACAGGATGGTAACTGAGTGTTTGAGAAATTGTTCTCAG
Seq A exon
GACTCAGTGACCTTTGCTGATGTGGCTGTGAACTTCACCCAGGAAG
Seq C2 exon
AGTGGACTTTACTGAACCGCTTTCAGAGAAAGCTGTACAGAGATGTGATGCTGGAGAACTACAAGAACCTGACCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039523-5-4,5-3,5-2,5-1-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCTTTCTGCCTTCCTGA
R:
TCTCCAGCATCACATCTCTGT
Band lengths:
134-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development