BtaALTA0033947-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14743866-14744541:+
Coord C1 exon
chr7:14743866-14743992
Coord A exon
chr7:14744302-14744445
Coord C2 exon
chr7:14744446-14744541
Length
144 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCTTTCACTGTGTTCCTTAGAAA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GAATCAGTGACTTTCCAGGATGTTGCTGTGGACTTCACTGAGAAGGAGTGGCCCTTGCTGGACTCTACTCAGAGAAAACTATACAAAGATGTGATGCTGGAGAACTACAGCAACCTTGCTTCAGTGG
Seq A exon
AAATGTGGCACCGCCGTTTTGCTGCTCCTAAGTCAGACTTGTCCATCCTCAGAACACTGAAGACCAAAACACTGACCCCAGACTATTGGAAGGGGTGGTCCTCTGCACGATCTTCCCTCAACATATGTCTTTCCCTGTGAGTAG
Seq C2 exon
GGTGCCAGGTGGGCAAACCCAGCCTCATCTCCCACTTGGAGCAAGAAGAGGAGCTGAGGACAGAGGATCGGGAACTTCACCGAGGCCCTTGTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077-7-7,7-6,7-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.576
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGACTTTCCAGGATGTTGC
R:
GGACAAGGGCCTCGGTGAAG
Band lengths:
218-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development