BtaALTA0033969-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008902 | ZNF345
Description
Bos taurus zinc finger protein 345 (ZNF345), mRNA. [Source:RefSeq mRNA;Acc:NM_001035327]
Coordinates
chr18:47834232-47835842:-
Coord C1 exon
chr18:47835716-47835842
Coord A exon
chr18:47834309-47834311
Coord C2 exon
chr18:47834232-47834308
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTCTATTGTTTTTTTTCAAGGAG
3' ss Score
7.67
Exon sequences
Seq C1 exon
GATTTGGTGATGTTCAGAGATGTGACTGTGGACTTTTCTCAGGAAGAGTGGGAATGCCTGAACTCAAATCAGAGGAATTTATACAGAGATGTGATATTAGAGAATTATAGCAACTTGGTGTCACTGG
Seq A exon
GAG
Seq C2 exon
GATGTTCCATTTCTAAGCCAGATGTAATTACTCTGTTAGAGCAAGGGAAAGAACCCTGGATGGTTGTGAGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008902-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCAACTTGGTGTCACTGG
R:
ATCCCTCACAACCATCCAGGG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development