BtaALTA0033972-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000034005 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]
Coordinates
chr22:16494276-16496849:+
Coord C1 exon
chr22:16494276-16494328
Coord A exon
NA
Coord C2 exon
chr22:16496537-16496849
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GTTTTCTGATTTCCCAGTAGATA
3' ss Score
6.3
Exon sequences
Seq C1 exon
CGCCTTCTGCTCCAGAGCTCGCGAGCTCCGGCCGTGCTTCTGCTCCGCGCACG
Seq A exon
NA
Seq C2 exon
ATACTACTCATCATGTCCCTGGGAGGAAACTCAGGAAGAAGCTTTTGAAACTTAAAGATTAGATGGGGCTTGACTTCTGCTGGGCAACCCCCAGCCATAGGAATTCTGCTGAGCAGAGACGATGACCACAGAATTGAGAGAGGCTGTGGCCCTGGCTCACTGGGGCCCAGTGACAGTGAAAAAAGAGGAAGAAGAGGAGGAAGGCTTTGTGGGCCAGGCATCCAGCCAACAAGTGCACTCTGAAAACATCAAAGTCTGGGCCCCTGGGGAAGCTCCTCAGACATGCCTCCCTGTGTCAGAACAGGAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034005-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.766
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development