BtaALTA0033974-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010046 | ZNF350
Description
Bos taurus zinc finger protein 350 (ZNF350), mRNA. [Source:RefSeq mRNA;Acc:NM_001075708]
Coordinates
chr18:58216473-58218685:+
Coord C1 exon
chr18:58216473-58216565
Coord A exon
chr18:58218582-58218584
Coord C2 exon
chr18:58218585-58218685
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTCTTCTTTTCTTTCCCAGAAG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTTTTCAAGCAAGCACACCAGAGGTACTCTCCAAATTGGATCAAGGAGAACCATGGATGATGGATGATGAAATCCACTGTCGAACCCGTTCAG
Seq A exon
AAG
Seq C2 exon
TCTGGAAAGTTGATGGCCACCTGCTGGAACACTTACAAAAGAAGAGAGTGGAGAAAAGACTAGAACGATGGCTTGAACAGAACCCACTGGACAATTCTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010046-6-5,6-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCACTGTCGAACCCGTTC
R:
GGGTTCTGTTCAAGCCATCGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development