BtaALTA0033978-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017123 | ZNF354B
Description
zinc finger protein 354B [Source:HGNC Symbol;Acc:HGNC:17197]
Coordinates
chr7:3419014-3420269:+
Coord C1 exon
chr7:3419014-3419160
Coord A exon
chr7:3420110-3420181
Coord C2 exon
chr7:3420182-3420269
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATTCTCCTTCTCTGTAAAGGTT
3' ss Score
9
Exon sequences
Seq C1 exon
GTTTTGCCGCTGGCGTGAAAGGCCTCCCGGCGTGAGGCCGACCCAGGCAGCACCTCGGACAAGTCCCTACCTGAAGCAGTTGTCTGGCCGTGTCAGTTCCGGAGCGTAACACTTGCTGCCCGTGGAACCCCCGGAGGCCCGGGCGAG
Seq A exon
GTTTCAGAGCTGCTGATTCTAAGGGGTGGAAAGAGAAGGGGCTTCCTCCTGGCTCCCTTTTTCTTCTCTCAG
Seq C2 exon
ATCTGACTTCTGGAGACTTCACCCATCCTCAAGGGAAACTGCTCATCAAAAGGATATGGCTGCCGAACAGAGGGAAGCAAGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017123-0-6,0-5,0-4,0-3-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.545
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGACAAGTCCCTACCTGA
R:
GACCTTGCTTCCCTCTGTTCG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development