BtaALTA0033988-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47539890-47541568:+
Coord C1 exon
chr18:47539890-47540016
Coord A exon
chr18:47541473-47541475
Coord C2 exon
chr18:47541476-47541568
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
AACATGTCTTTTCTCTCAAGCAG
3' ss Score
4.87
Exon sequences
Seq C1 exon
GAGCTAGTGACATTCAAGGATGTGGCTGTCGACTTTACCGAGGAGGAGTGGCAGCATCTGGACCCTTCTCAGAGGCACCTGTACCGAGAAGTGATGTTGGAGAACTTTGGGAATCTCATCTCCTTGG
Seq A exon
CAG
Seq C2 exon
GGCATCTGCTGTCTGAACCAGAAATGATTTTCCATTTTGAACAAGAAGATGATGTGTGGATGGAAGAAACAATACCAAGAAGCTCTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869-10-17,10-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGACCCTTCTCAGAGGC
R:
CTGGTTCAGACAGCAGATGCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development