BtaALTA0033990-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038869 | ZNF383
Description
Bos taurus zinc finger protein 383 (ZNF383), mRNA. [Source:RefSeq mRNA;Acc:NM_001102232]
Coordinates
chr18:47532346-47535909:+
Coord C1 exon
chr18:47532346-47532439
Coord A exon
chr18:47535671-47535777
Coord C2 exon
chr18:47535778-47535909
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCTCCTCTCCTGCCTACAGGAA
3' ss Score
11.19
Exon sequences
Seq C1 exon
CGGCGGTGCGGGTGTATCGGGCTCATTGCGTGGAACGAAGGCTGGTGAAGGCCCTGTGGCGGCCTCCATGCCCAAGATCTCCAGGCCTAGAGAG
Seq A exon
GAACAAAACAGCTACCTGAGCATGAAGGCCGCAGGAGGCCCCCCACATGCAGGAGTTCCGTCTTTCGTGGAGACAACACCTCCTGAAACTCCCTCTGGATGTTCCAG
Seq C2 exon
GTGGAGCTTGGAGAGGCTGAAGAGAGATTCCCCCAGCAGAGCCACTGGGCTACGGGGATTCCCTTCCTAACAGGGCGGGCAGGATGTGGGGCCACATTGAAGCTGGAATGACCTCAGAGGCTAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038869-7-9,7-8,7-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.412
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGTATCGGGCTCATTG
R:
CTTTTTCCTTAGCCTCTGAGGTCA
Band lengths:
218-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development