BtaALTA0034003-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113060026-113061263:+
Coord C1 exon
chr4:113060026-113060152
Coord A exon
chr4:113061150-113061184
Coord C2 exon
chr4:113061185-113061263
Length
35 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTCCCATTTTCCTCTCGTAGATT
3' ss Score
10.59
Exon sequences
Seq C1 exon
GTGCCTGTGACATTCGATGATATCTCCATCTACTTTTCCACTCCAGAATGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGAAACTATGAGTCTCTCATCTCCATGG
Seq A exon
ATTATGCCATGAATCAACCCGATGTCTTATCTCAG
Seq C2 exon
ATTCAGCCAGAAGGAGACCGCAATACAGAGGACCAGACTGGGCCAGAGGAGAGTGGGATTCCCACCGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445-6-4,6-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.821
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTCCACTCCAGAATGGGA
R:
GTATTGCGGTCTCCTTCTGGC
Band lengths:
122-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development