BtaALTA0034023-3/6 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52438361-52440349:+
Coord C1 exon
chr18:52438361-52438418
Coord A exon
chr18:52440227-52440266
Coord C2 exon
chr18:52440267-52440349
Length
40 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GAGTGTGATTGATGTTGTAGGAG
3' ss Score
4.31
Exon sequences
Seq C1 exon
GCCTTCCCAAGACTCAGCAGTTCCCCAGAAGGAAGAGGAAAAAATGTCCAAGTTCAAG
Seq A exon
GAGGCAGTGACCTTCAAGGATGTGGCCGTGGTCTTCACAG
Seq C2 exon
AGGAGGAGATGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCAGGAAGTGATGCTGGAGAACTTCCGGAACCTGCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263-10-12,10-11,10-10,10-9,10-8,10-7-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACTCAGCAGTTCCCCAG
R:
AGAGCAGGTTCCGGAAGTTCT
Band lengths:
132-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development