BtaALTA0034046-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019518 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr11:72275326-72275840:+
Coord C1 exon
chr11:72275326-72275426
Coord A exon
NA
Coord C2 exon
chr11:72275692-72275840
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCCCCTTTGCCTGCAGCAGCCT
3' ss Score
2.43
Exon sequences
Seq C1 exon
ACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAACCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCCACAG
Seq A exon
NA
Seq C2 exon
CCTGGGCAACCTGAGGCGGCATCAGCGCACCCATGCAGGGCCCCCCACCCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTGCTCCACGTCCTGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCTCGGCGACCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019518-7-3,7-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTGAGGAGCCAACCAGG
R:
GATGCCGCCTCAGGTTGC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development