BtaALTA0034058-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000030929 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr7:17218711-17219665:+
Coord C1 exon
chr7:17218711-17218768
Coord A exon
chr7:17219577-17219581
Coord C2 exon
chr7:17219582-17219665
Length
5 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGATATTTCTTCTTCTCCAGCTC
3' ss Score
6.95
Exon sequences
Seq C1 exon
GGAAAACGTCACTGTCTGAATTGCAGGATGGCGACCATGGTCCTGTCCCCGACTTGTG
Seq A exon
CTCAG
Seq C2 exon
TCGTCCCTGTACACAGCCCCTCACCAGAAAGGATACGCAGAGAAGGAAGGGTTGGCCCGTGGCTTCCTGACAGACTGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030929-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAATTGCAGGATGGCGAC
R:
GCCAACCCTTCCTTCTCTGC
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development