BtaALTA0034079-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014593 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr18:58090275-58091242:-
Coord C1 exon
chr18:58091116-58091242
Coord A exon
chr18:58090336-58090433
Coord C2 exon
chr18:58090275-58090335
Length
98 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CAAAATCAAACTTTGTACAGTTC
3' ss Score
2.88
Exon sequences
Seq C1 exon
GGCTCTGTGTCATTCGAGGATGTGGCTGTGGGCTTCAGCCAGGAGGAGTGGCAGATACTGGGCCCATCTCAGAAGGCCCTGTACTGGGACGTCATGTTGGAGAACTACTGCAACTTAGTGTCAGTAG
Seq A exon
TTCTCGTAGATCACCCCGGCTCAAATGCTCAGCACCGGCCATCCCGTGATTTCCCGTTTACAGGATATCAGGCTCCCACACCAAATTCACTCTTTCAG
Seq C2 exon
TTGGAACAAGGAGGACCCCCGTGGACGGTCGAGGGAGCAGCCCTGAGTCCAACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014593-13-13,13-12,13-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCATTCGAGGATGTGGC
R:
CTGAGCAGGTTGGACTCAGGG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development