BtaALTA0034082-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018057 | ZNF619
Description
zinc finger protein 619 [Source:HGNC Symbol;Acc:HGNC:26910]
Coordinates
chr22:13346709-13347623:+
Coord C1 exon
chr22:13346709-13346850
Coord A exon
chr22:13347541-13347564
Coord C2 exon
chr22:13347565-13347623
Length
24 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TCCTTTTCTGTGTCCTTCAGCAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
AGCCTGTTGTTTCAGGAGCCAGTGACCTTTGAGGACGTGGCCGTGTACTTCACCCAGAACCAATGGGCCAGCCTGGACTCTGCGCAGAGGGCCCTGTACAGGGAGGTGATGCTGGAGAATTACCCAAACATAACTTCCTTGA
Seq A exon
CAGCATTTCCATTCCCCAAACCAG
Seq C2 exon
ATCTGATCTTCTGGCTGGAGCGAGGGGAAGAACCAGGGCGCCTGGATCCCTGGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018057-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGGAGGTGATGCTGGAG
R:
AGTGTCCAGGGATCCAGGC
Band lengths:
104-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development