BtaALTA0034111-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1517356-1518060:+
Coord C1 exon
chr14:1517356-1517456
Coord A exon
NA
Coord C2 exon
chr14:1517934-1518060
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
ACTGGTGTGTGTCCTTTCAGGAG
3' ss Score
10.6
Exon sequences
Seq C1 exon
TGAGAGGTTGGGGCCTCCAGGATCGTGACCTCTGACTCTTTGGTAACCGCCAACAGGTCTCTCAGCCAGGACACGTGGATTCCCACCCACCGAGCCTCATG
Seq A exon
NA
Seq C2 exon
GAGGCTGTGACATTTGGTGATGTGGCCGTGCACTTCTCGCGGGAGGAATGGCAGTGTCTGGACCCTGGCCAGAGGGCTCTCTACAAGGAGGTGATGCTTGAGAACCACAGCAGTGTGGCTGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTAACCGCCAACAGGTC
R:
GTCCAGACACTGCCATTCCTC
Band lengths:
126-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development